Blue Bottle Coffee - I went to the one in the Rockefeller Centre
Stumptown Coffee Roasters - W 29th St location was near where I was staying
Gimme Coffee – Several locations, I visited the one in Soho
Smith Canteen – Carroll Gardens, Brooklyn.
Blue Bottle Coffee – Mint Plaza in downtown San Francisco
The Plant Cafe Organic – Pier 3, along the bay. They use Blue Bottle beans
Philz Coffee – Customised blends of individually made filter coffee. An interesting experience
Milano Boutique Coffee Roasters - In the Gaslight area. Worth finding